Materials for Coding togetheR. A series of collaborative workshops to teach foundational R coding and data science skills at the University of Southampton 2019-2020.
A tutorial is to demonstrate one way to create a colour palette and corresponding gradients in R
Slides from Software Carpentry Workshop, 9th and 10th October 2018 in Umeå Sweden
Materials for proteomics data science workshop including introduction to R, Volcano plots, heatmaps and peptide logos
A toy model that attempts to classify peptides from my some of my experiments according to one of five MHC class I allotypes present in the cells I use.
A dashboard to display the results of the MHC I HDX project
A short tutorial for producing heatmaps in R using some sample data.
This project sought to explain the mechanism of peptide selection by two functionally distinct MHC I allotypes using a combination of molecular dynamics and mathematical modelling of biochemical experiments.
A Shiny app I made for calculating the amount to weigh out or dilute for making solutions