Coding togetheR

Materials for Coding togetheR. A series of collaborative workshops to teach foundational R coding and data science skills at the University of Southampton 2019-2020.

Creating and using a colour palette and colour gradients for plotting

A tutorial is to demonstrate one way to create a colour palette and corresponding gradients in R

Umeå Software Carpentry Workshop

Slides from Software Carpentry Workshop, 9th and 10th October 2018 in Umeå Sweden

British Society for Proteomics 2018 Data Science Workshop

Materials for proteomics data science workshop including introduction to R, Volcano plots, heatmaps and peptide logos

Machine Learning for MHC I peptide classification

A toy model that attempts to classify peptides from my some of my experiments according to one of five MHC class I allotypes present in the cells I use.

MHC dynamics dashboard

A dashboard to display the results of the MHC I HDX project

R heatmap tutorial using d3heatmap

A short tutorial for producing heatmaps in R using some sample data.

Selector function of MHC I molecules is determined by protein plasticity

This project sought to explain the mechanism of peptide selection by two functionally distinct MHC I allotypes using a combination of molecular dynamics and mathematical modelling of biochemical experiments.

Biochem Calculator

A Shiny app I made for calculating the amount to weigh out or dilute for making solutions