Publications

I am joint first author on all work with Ben Nicholas.
Published

Last Updated on 2024-09-27

  1. Ben Nicholas, Alistair Bailey, Katy J McCann, Robert C. Walker, Peter Johnson, Tim Elliott, Tim J. Underwood, Paul Skipp (2024) “Comparative analysis of protein expression between oesophageal adenocarcinoma and normal adjacent tissue” bioRxiv. DOI: 10.1101/2024.09.20.614054
  1. Matt Sherwood, Ben Nicholas, Alistair Bailey, Thiago Mitsugi, Carolini Kaid, Oswaldo K. Okamoto, Paul Skipp, Rob M. Ewing (2024) “Identification of natural Zika virus peptides presented on the surface of paediatric brain tumour cells by HLA class I” bioRxiv. DOI: 10.1101/2024.09.17.613406
  1. Ben Nicholas, Alistair Bailey, Katy J McCann, Peter Johnson, Tim Elliott, Christian Ottensmeier and Paul Skipp (2024) “Comparative analysis of transcriptomic and proteomic expression between two non-small cell lung cancer subtypes” bioRxiv. DOI: 10.1101/2024.09.05.611373
  1. Ben Nicholas, Alistair Bailey, Katy J McCann, Oliver Wood, Eve Currall, Peter Johnson, Tim Elliott, Christian Ottensmeier, Paul Skipp (2024) “Proteogenomics guided identification of functional neoantigens in non-small cell lung cancer” bioRxiv. DOI: 10.1101/2024.05.30.596609
  1. N. Leigh Anderson, Alistair Bailey, Perdita Barran, Philip Brownbridge, Kathleen M. Cain, Rachel S. Carling, Rainer Cramer, R. Neil Dalton, Matthew E. Daly, Kayleigh Davis, Ivan Doykov, Maria Emilia Dueñas, Edward Emmott, Claire E. Eyers, Akshada Gajbhiye, Bethany Geary, Pankaj Gupta, Jenny Hällqvist, Evita Hartmane, Simon Heales, Tiaan Heunis, Wendy Heywood, Katherine A. Hollywood, Rosalind E. Jenkins, Donald J.L. Jones, Brian Keevil, Henriette Krenkel, Dan Lane, Catherine S. Lane, Sophie Lellman, Ellen N. Liggett, Xiaoli Meng, Clare Mills, Kevin Mills, Atakan A. Nalbant, Leong L. Ng, Benjamin Nicholas, Dan Noels, Terry W. Pearson, Andrew Pitt, Matthew E. Pope, Andrew Porter, George W. Preston, Morteza Razavi, Andrew Shapanis, Frances R. Sidgwick, Raj Singh, Paul Skipp, Reynard Spiess, Justyna Spiewak, Anna L. Tierney, Drupad Trivedi, Matthias Trost, Richard D. Unwin, Luke Wainwright, Caitlin Walton-Doyle, Anthony D. Whetton, Sandra Wilks, Richard Yip (2024) “Development and translation of a method of clinical utility for LC-MS/MS analysis to detect SARS-CoV-2 antigens from ONP swabs and saliva” ChemRxiv. DOI: 10.26434/chemrxiv-2024-4t52c
  1. Ben Nicholas, Alistair Bailey, Katy J. McCann, Oliver Wood, Robert C. Walker; Robert Parker, Nicola Ternette, Tim Elliott, Tim J. Underwood, Peter Johnson and Paul Skipp (2022) “Identification of neoantigens in oesophageal adenocarcinoma” Immunology. DOI: 10.1111/imm.13578
  1. Jenny Hällqvist , Dan Lane , Andrew Shapanis , Kayleigh Davis , Wendy E. Heywood , Ivan Doykov , Justyna Śpiewak , Nana Ghansah , Brian Keevil , Pankaj Gupta , Rebekah Jukes-Jones , Raj Singh , Dominic Foley , Johannes P.C. Vissers , Rebecca Pattison , Samantha Ferries , Robert Wardle , Amy Bartlett , Lisa J. Calton , Leigh Anderson , Morteza Razavi , Terry Pearson , Matt Pope , Richard Yip , Leong L. Ng , Benjamin I. Nicholas , Alistair Bailey , Dan Noel , R. Neil Dalton , Simon Heales , Christopher Hopley , Andrew R. Pitt , Perdita Barran , Donald J. L. Jones , Kevin Mills , Paul Skipp and Rachel S. Carling (2022) “Operation Moonshot: rapid translation of a SARS-CoV-2 targeted peptide immunoaffinity liquid chromatography-tandem mass spectrometry test from research into routine clinical use” Clinical Chemistry and Laboratory Medicine. DOI: 10.1515/cclm-2022-1000
  1. Ben Nicholas, Jane Guo, Hyun‐Hee Lee, Alistair Bailey, Rene de Waal Malefyt, Milenko Cicmil and Ratko Djukanovic (2022) “Analysis of cell‐specific peripheral blood biomarkers in severe allergic asthma identifies innate immune dysfunction” Clinical & Experimental Allergy. DOI: 10.1111/cea.14197
  1. Ben Nicholas, Alistair Bailey, Karl J. Staples, Tom Wilkinson, Tim Elliott, Paul Skipp (2022) “Immunopeptidomic analysis of influenza A virus infected human tissues identifies internal proteins as a rich source of HLA ligands” PLOS Pathogens. DOI: 10.1371/journal.ppat.1009894
  1. Rachel S. Owen, Sri H. Ramarathinam, Alistair Bailey, Annalisa Gastaldello, Kathryn Hussey, Paul J. Skipp, Anthony W. Purcell, Hannah V. Siddle (2021) “The differentiation state of the Schwann cell progenitor drives phenotypic variation between two contagious cancers” PLOS Pathogens. DOI: 10.1371/journal.ppat.1010033
  1. Annalisa Gastaldello, Sri H. Ramarathinam, Alistair Bailey, Rachel Owen, Steven Turner, N. Kontouli, Tim Elliott, Paul Skipp, Anthony W. Purcell, Hannah V. Siddle. (2021) “The immunopeptidomes of two transmissible cancers and their host have a common, dominant peptide motif” Immunology. DOI: 10.1111/imm.13307
  1. Alistair Bailey, Ben Nicholas, Rachel Darley, Erika Parkinson, Ying Teo, Maja Aleksic, Gavin Maxwell, Tim Elliott, Michael Ardern-Jones, Paul Skipp. (2020) “Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells” Toxicological Sciences. DOI: 0.1093/toxsci/kfaa184
  1. Cory M. Ayres, Esam T. Abualrous, Alistair Bailey, Christian Abraham, Lance M. Hellman, Steven A. Corcelli, Frank Noé, Tim Elliott, Brian M. Baker. (2019) “Dynamically Driven Allostery in MHC Proteins: Peptide-Dependent Tuning of Class I MHC Global Flexibility” Frontiers in Immunology. DOI: 10.3389/fimmu.2019.00966
  1. Andy van Hateren, Malcolm Anderson, Alistair Bailey, Jörn M. Werner, Paul Skipp, Tim Elliott. (2017) “Direct evidence for conformational dynamics in major histocompatibility complex class I molecules” Journal of Biological Chemistry. DOI: 10.1074/jbc.M117.809624
  1. Andy van Hateren, Alistair Bailey, Tim Elliott. (2017) “Recent advances in Major Histocompatibility Complex class I antigen presentation: Plastic MHC molecules and TAPBPR mediated quality control” F1000 Research. DOI: 10.12688/f1000research.10474.1
  1. Alistair Bailey, Neil Dalchau, Rachel Carter, Stephen Emmott, Andrew Phillips, Jörn M. Werner, Tim Elliott (2015) “Selector function of MHC I molecules is determined by protein plasticity” Scientific Reports. DOI: 10.1038/srep14928
  1. Alistair Bailey, Andy van Hateren, Tim Elliott, Jörn M. Werner. (2014) “Two Polymorphisms Facilitate Differences in Plasticity between Two Chicken Major Histocompatibility Complex Class I Proteins” PLOS One. DOI: 10.1371/journal.pone.0089657
  1. Andy van Hateren, Rachel Carter, Alistair Bailey, Nasia Kontouli, Anthony P. Williams, Jim Kaufman, Tim Elliott. (2013) “A Mechanistic Basis for the Co-evolution of Chicken Tapasin and Major Histocompatibility Complex Class I Proteins” Journal of Biological Chemistry. DOI: 10.1074/jbc.M113.474031
  1. Andy Van Hateren, Edd James, Alistair Bailey, Andrew Phillips, Neil Dalchau, Tim Elliott (2010) “The cell biology of major histocompatibility complex class I assembly: towards a molecular understanding” Tissue Antigens. DOI: 10.1111/j.1399-0039.2010.01550.x

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